neuror unravel¶
CLI utilities related to unravelling.
neuror unravel [OPTIONS] COMMAND [ARGS]...
file¶
Unravel a cell.
neuror unravel file [OPTIONS] INPUT_FILE OUTPUT_FILE
Options
- --mapping-file <mapping_file>¶
Path to the file that contains the coordinate mapping before and after unravelling
- --window-half-length <window_half_length>¶
Arguments
- INPUT_FILE¶
Required argument
- OUTPUT_FILE¶
Required argument
folder¶
Unravel all cells in a folder
neuror unravel folder [OPTIONS] INPUT_DIR OUTPUT_DIR
Options
- --raw-plane-dir <raw_plane_dir>¶
The path to raw cut planes (if None, defaults to INPUT_DIR/planes)
- --unravelled-plane-dir <unravelled_plane_dir>¶
The path to unravelled cut planes (if None, defaults to OUTPUT_DIR/planes)
- --window-half-length <window_half_length>¶
Arguments
- INPUT_DIR¶
Required argument
- OUTPUT_DIR¶
Required argument