neuror unravel

CLI utilities related to unravelling.

neuror unravel [OPTIONS] COMMAND [ARGS]...

file

Unravel a cell.

neuror unravel file [OPTIONS] INPUT_FILE OUTPUT_FILE

Options

--mapping-file <mapping_file>

Path to the file that contains the coordinate mapping before and after unravelling

--window-half-length <window_half_length>

Arguments

INPUT_FILE

Required argument

OUTPUT_FILE

Required argument

folder

Unravel all cells in a folder

neuror unravel folder [OPTIONS] INPUT_DIR OUTPUT_DIR

Options

--raw-plane-dir <raw_plane_dir>

The path to raw cut planes (if None, defaults to INPUT_DIR/planes)

--unravelled-plane-dir <unravelled_plane_dir>

The path to unravelled cut planes (if None, defaults to OUTPUT_DIR/planes)

--window-half-length <window_half_length>

Arguments

INPUT_DIR

Required argument

OUTPUT_DIR

Required argument